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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
79
total RNA-seq
32
DNase-seq
31
ChIP-seq
16
ATAC-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
86
Transcription
49
DNA accessibility
31
DNA binding
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
150
February, 2021
30
June, 2019
18
July, 2019
18
November, 2017
12
February, 2020
9
February, 2023
9
October, 2019
4
October, 2017
3
May, 2019
2
March, 2020
2
November, 2018
1
May, 2021
Available data
143
bam
114
bigWig
88
txt
84
tsv
44
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
19
tagAlign
11
fastq
5
bed bed3
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
Organism
258
Homo sapiens
Biosample type
239
tissue
19
primary cell
Organ
795
pancreas
648
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
257
AMP
1
T1D
Genome assembly (visualization)
117
hg19
115
GRCh38
Lab
257
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
lab.title!
Karen Mohlke, UNC
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
258 results
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RNA microarray
total RNA-seq
DNase-seq
ChIP-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
bone element
84
bone tissue
58
brain
1
14
3
1
1
cerebellum (Hemisphere)
1
1
2
1
1
frontal cortex
2
2
1
1
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primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 3 more…
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