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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
Assay category
33
DNA binding
Target of assay
83
control
33
transcription factor
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
8
recombinant protein
4
RNA binding protein
3
nucleotide modification
Date released
11
August, 2021
8
November, 2017
7
October, 2019
5
February, 2021
1
November, 2018
1
November, 2019
Available data
356
bigWig
352
bed narrowPeak
349
bam
337
fastq
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
5
tagAlign
3
tar
Organism
33
Homo sapiens
Biosample type
47
in vitro differentiated cells
33
cell line
29
tissue
Organ
20
liver
7
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
1
epithelium
1
pancreas
Project
33
AMP
Genome assembly (visualization)
28
hg19
13
GRCh38
Lab
22
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
1
missing controlled_by
lab.title!
Karen Mohlke, UNC
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
cell line
HepG2
20
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
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