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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
ATAC-seq
212
DNase-seq
5
FAIRE-seq
2
snATAC-seq
Assay category
1743
DNA binding
1516
Transcription
615
DNA accessibility
50
DNA methylation
29
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
100
May, 2020
92
February, 2023
39
May, 2022
34
May, 2021
33
October, 2019
26
November, 2019
22
February, 2021
14
September, 2018
12
August, 2021
11
August, 2017
10
November, 2018
8
July, 2019
8
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
2
November, 2020
1
August, 2022
Available data
428
bed narrowPeak
389
bam
340
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
65
fastq
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
615
Homo sapiens
Biosample type
358
tissue
183
primary cell
43
in vitro differentiated cells
31
cell line
Organ
103
pancreas
82
kidney
77
heart
74
epithelium
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
8
adipose tissue
3
nerve
3
vein
2
spleen
1
blood
1
bodily fluid
1
pituitary gland
1
skin of body
Project
615
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
453
hg19
356
GRCh38
Lab
562
AMP-T2D consortium
Katalin Susztak, Upenn
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
46
inconsistent ontology term
2
audit script error
1
inconsistent replicate
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
615 results
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Clear Filters
ATAC-seq
DNase-seq
FAIRE-seq
snATAC-seq
tissue
islet of Langerhans
57
1
1
1
coronary artery
36
2
liver
20
2
heart
18
retina
15
3
+ See 59 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
pancreatic beta cell
7
+ See 56 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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