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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
total RNA-seq
9
single cell RNA-seq
Assay category
139
Transcription
59
DNA binding
46
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Date released
69
May, 2021
44
February, 2021
6
July, 2018
5
October, 2019
4
March, 2020
4
May, 2020
2
December, 2019
2
February, 2023
1
February, 2020
1
June, 2018
1
November, 2019
Available data
137
tsv
134
bam
134
bigWig
7
fastq
Organism
139
Homo sapiens
Biosample type
91
in vitro differentiated cells
36
cell line
11
primary cell
1
tissue
Organ
38
pancreas
35
epithelium
3
kidney
2
connective tissue
2
embryo
1
brain
Project
133
AMP
6
T1D
Genome assembly (visualization)
134
GRCh38
134
hg19
Lab
135
AMP-T2D consortium
4
Kyle Gaulton, UCSD
Audit category:
139
inconsistent ontology term
7
audit script error
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
139 results
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total RNA-seq
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
cardiomyocytes (cardiac muscle cell)
3
2
immature adipocyte
2
intermediate cardiomyocytes
1
+ See 5 more…
cell line
EndoC_BH1
33
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
primary cell
central memory CD8-positive, alpha-beta T cell
2
co-expressing pancreatic endocrine cell
2
naive B cel
2
unclassified exocrine cell
2
unclassified pancreatic endocrine cell
2
+ See 1 more…
tissue
cerebellum (Hemisphere)
1
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