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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
988
total RNA-seq
867
ChIP-seq
185
ATAC-seq
DNase-seq
163
single cell RNA-seq
87
RNA microarray
27
WGBS
25
pCHi-C
22
snATAC-seq
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1167
Transcription
867
DNA binding
211
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
282
August, 2017
238
October, 2019
193
May, 2020
120
July, 2018
115
May, 2019
101
August, 2021
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
25
February, 2020
23
October, 2017
19
April, 2020
17
November, 2018
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1730
bam
1555
bigWig
1076
tsv
703
bed narrowPeak
384
bigBed narrowPeak
367
fastq
238
tagAlign
100
txt
37
bed broadPeak
29
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
10
bedpe bed3+
10
hic
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2408
Homo sapiens
Biosample type
2417
tissue
1057
primary cell
660
cell line
393
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
498
pancreas
486
adipose tissue
357
liver
246
heart
238
brain
158
bone element
128
blood vessel
128
vasculature
89
kidney
86
limb
69
artery
53
eye
50
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2320
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1593
hg19
1567
GRCh38
Lab
2247
AMP-T2D consortium
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Katalin Susztak, Upenn
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
2417 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
71
68
4
7
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
1
3
1
1
1
1
bone element
84
kidney
27
53
1
1
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