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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
117
ATAC-seq
87
single cell RNA-seq
56
snATAC-seq
44
total RNA-seq
31
DNase-seq
17
pCHi-C
10
RRBS
7
Hi-C
1
DNAme array
1
FAIRE-seq
Assay category
209
DNA binding
205
DNA accessibility
131
Transcription
11
DNA methylation
7
3D chromatin structure
Target of assay
179
histone
179
histone modification
95
broad histone mark
84
narrow histone mark
20
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
102
May, 2020
55
June, 2019
54
May, 2022
41
February, 2021
40
September, 2020
39
February, 2023
32
October, 2019
18
August, 2017
13
July, 2019
9
November, 2017
8
January, 2021
5
May, 2019
4
August, 2021
2
November, 2020
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
421
bigWig
415
bam
227
bed narrowPeak
tsv
151
fastq
100
tagAlign
87
bigBed narrowPeak
73
zippedFastqFolder
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
580
Homo sapiens
Biosample type
1329
tissue
580
primary cell
485
cell line
260
in vitro differentiated cells
6
stem cell
Organ
290
epithelium
pancreas
35
vasculature
30
kidney
29
blood vessel
24
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
bone element
1
bone marrow
Project
299
AMP
172
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
293
hg19
194
GRCh38
Lab
264
AMP-T2D consortium
172
Klaus Kaestner, Upenn
143
Kyle Gaulton, UCSD
1
ITG
Audit category:
37
inconsistent ontology term
28
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
lab.title!
Katalin Susztak, Upenn
files.file_type!
tsv
organ_slims!
pancreas
BIOSAMPLE
ASSAY
580 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
total RNA-seq
DNase-seq
pCHi-C
RRBS
Hi-C
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
monocyte
85
15
1
1
1
exocrine cell
39
CD8-positive, alpha-beta T cell
33
2
2
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
1
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