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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ChIP-seq
72
ATAC-seq
53
total RNA-seq
41
WGBS
18
DNase-seq
7
Hi-C
6
RRBS
1
FAIRE-seq
Assay category
92
DNA binding
91
DNA accessibility
53
Transcription
47
DNA methylation
7
3D chromatin structure
Target of assay
66
histone
66
histone modification
35
narrow histone mark
31
broad histone mark
21
control
5
RNA binding protein
5
transcription factor
Date released
80
May, 2022
37
February, 2023
35
September, 2018
31
October, 2019
29
August, 2017
20
June, 2019
19
September, 2020
8
July, 2019
7
August, 2020
6
November, 2017
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
1
March, 2020
Available data
242
bam
238
fastq
231
bigWig
tsv
106
bed narrowPeak
80
zippedFastqFolder
61
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
290
Homo sapiens
Biosample type
290
primary cell
44
cell line
22
in vitro differentiated cells
12
tissue
Organ
290
epithelium
238
pancreas
35
vasculature
30
kidney
29
blood vessel
24
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
bone element
1
bone marrow
Project
146
HPAP
144
AMP
Genome assembly (visualization)
117
hg19
115
GRCh38
Lab
146
Klaus Kaestner, Upenn
144
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
lab.title!
Katalin Susztak, Upenn
files.file_type!
tsv
BIOSAMPLE
ASSAY
290 results
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ChIP-seq
ATAC-seq
total RNA-seq
WGBS
DNase-seq
Hi-C
RRBS
FAIRE-seq
primary cell
pancreatic alpha cell
13
35
42
25
1
pancreatic beta cell
13
23
11
16
1
endothelial cell of umbilical vein
17
2
2
1
pancreatic acinar cell
8
9
1
pancreatic ductal cell
13
4
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