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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
ChIP-seq
178
DNase-seq
172
ATAC-seq
85
RNA microarray
60
single cell RNA-seq
53
total RNA-seq
27
WGBS
22
snATAC-seq
15
Hi-C
11
RRBS
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
Assay category
907
DNA binding
376
DNA accessibility
113
Transcription
38
DNA methylation
15
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
234
October, 2019
195
August, 2017
163
June, 2019
115
May, 2019
85
February, 2021
83
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
50
May, 2020
48
December, 2017
47
September, 2023
40
May, 2024
30
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
19
April, 2020
12
March, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
July, 2018
4
November, 2020
2
August, 2021
2
January, 2018
2
May, 2021
1
August, 2022
1
December, 2019
1
May, 2023
Available data
1899
bam
1772
bigWig
tsv
912
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
96
txt
25
bed bedMethyl
25
bigBed bedMethyl
10
bedpe bed3+
10
hic
6
csv
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1534
Homo sapiens
Biosample type
1543
tissue
818
primary cell
543
cell line
263
in vitro differentiated cells
6
stem cell
Organ
242
brain
230
pancreas
207
liver
202
heart
145
kidney
119
blood vessel
119
vasculature
115
limb
100
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
51
eye
38
nerve
24
spleen
19
lung
18
ureter
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1446
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
859
GRCh38
824
hg19
Lab
1334
AMP-T2D consortium
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Katalin Susztak, Upenn
files.file_type!
tsv
organ_slims!
skeleton
BIOSAMPLE
ASSAY
1543 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
RNA microarray
single cell RNA-seq
total RNA-seq
WGBS
snATAC-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
MeRIP-seq
tissue
liver
145
2
20
1
20
3
1
1
islet of Langerhans
71
1
67
31
7
3
1
4
1
4
kidney
27
13
48
1
1
bone element
84
heart left ventricle
35
3
2
4
1
1
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