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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
220
ChIP-seq
177
DNase-seq
103
total RNA-seq
29
ATAC-seq
10
WGBS
3
RRBS
2
FAIRE-seq
1
snATAC-seq
Assay category
220
DNA binding
209
DNA accessibility
103
Transcription
13
DNA methylation
Target of assay
79
transcription factor
74
histone modification
73
histone
67
control
45
broad histone mark
28
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
175
August, 2017
163
June, 2019
58
October, 2018
48
December, 2017
26
November, 2018
25
May, 2022
17
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
October, 2019
2
July, 2018
1
March, 2019
Available data
1907
bam
1772
bigWig
1076
tsv
920
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
100
txt
25
bed bedMethyl
25
bigBed bedMethyl
10
bedpe bed3+
10
hic
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
538
Homo sapiens
Biosample type
545
tissue
446
primary cell
430
cell line
147
in vitro differentiated cells
4
stem cell
Organ
217
pancreas
83
liver
68
kidney
44
adipose tissue
44
connective tissue
37
brain
36
limb
35
musculature of body
27
heart
24
spleen
18
ureter
5
blood vessel
5
vasculature
4
artery
3
eye
2
nerve
Project
545
AMP
Genome assembly (visualization)
447
GRCh38
446
hg19
Lab
519
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
1
audit script error
1
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
545 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
WGBS
RRBS
FAIRE-seq
snATAC-seq
tissue
islet of Langerhans
28
1
103
20
1
liver
67
2
1
1
body of pancreas
33
4
4
2
spleen
20
1
1
2
brain
9
14
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