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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
DNase-seq
6
ChIP-seq
2
Hi-C
Assay category
11
DNA accessibility
6
DNA binding
2
3D chromatin structure
Target of assay
2
RNA binding protein
2
control
2
histone
2
histone modification
2
narrow histone mark
2
transcription factor
Date released
7
June, 2019
6
November, 2017
4
October, 2019
2
July, 2019
Available data
185
bam
155
bigWig
133
bed narrowPeak
83
bigBed narrowPeak
68
tsv
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
6
fastq
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
19
Homo sapiens
Biosample type
14
primary cell
5
tissue
Organ
477
pancreas
472
liver
278
epithelium
116
connective tissue
78
kidney
60
blood
60
bodily fluid
54
brain
45
adipose tissue
36
limb
36
musculature of body
30
heart
27
embryo
24
spleen
19
vasculature
18
ureter
14
blood vessel
4
artery
4
eye
2
nerve
2
vein
Project
19
AMP
Genome assembly (visualization)
18
hg19
15
GRCh38
Lab
19
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
19 results
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DNase-seq
ChIP-seq
Hi-C
primary cell
brain microvascular endothelial cell
1
3
1
choroid plexus epithelial cell
1
3
endothelial cell of umbilical vein
2
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
+ See 1 more…
tissue
coronary artery
2
tibial artery
2
ascending aorta
1
See all biosamples
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