Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
885
total RNA-seq
687
ChIP-seq
168
DNase-seq
163
single cell RNA-seq
155
ATAC-seq
87
RNA microarray
25
pCHi-C
22
snATAC-seq
17
WGBS
16
small RNA-seq
15
Hi-C
8
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
1064
Transcription
687
DNA binding
347
DNA accessibility
25
DNA methylation
15
3D chromatin structure
Target of assay
554
histone
554
histone modification
296
narrow histone mark
258
broad histone mark
120
control
15
transcription factor
13
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
242
October, 2019
193
May, 2020
163
June, 2019
118
July, 2018
115
May, 2019
109
August, 2017
101
August, 2021
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
47
September, 2023
42
May, 2022
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
19
April, 2020
16
October, 2018
8
January, 2021
6
October, 2017
4
November, 2020
3
December, 2019
3
March, 2019
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1907
bam
1772
bigWig
1076
tsv
920
bed narrowPeak
561
bigBed narrowPeak
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
100
txt
25
bed bedMethyl
25
bigBed bedMethyl
10
bedpe bed3+
10
hic
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2255
Homo sapiens
Biosample type
2257
tissue
679
primary cell
253
in vitro differentiated cells
235
cell line
6
stem cell
Organ
504
connective tissue
445
adipose tissue
313
heart
291
pancreas
278
liver
253
brain
158
bone element
157
kidney
133
blood vessel
133
vasculature
122
limb
80
musculature of body
73
artery
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
2160
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1504
GRCh38
1460
hg19
Lab
2074
AMP-T2D consortium
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
91
inconsistent ontology term
9
audit script error
lab.title!
Katalin Susztak, Upenn
Maike Sander, UCSD
files.file_type!
fastq
BIOSAMPLE
ASSAY
2257 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
ATAC-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
195
43
47
4
7
3
1
4
liver
167
78
1
20
1
2
1
1
kidney
27
13
53
1
1
bone element
84
+ See 175 more…
See all biosamples
Download