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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
single cell RNA-seq
43
ChIP-seq
17
total RNA-seq
12
ATAC-seq
5
STARR-seq
4
Capture-C
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
115
Transcription
43
DNA binding
12
DNA accessibility
2
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
397
May, 2021
May, 2020
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
183
August, 2021
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
81
December, 2017
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
26
February, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
115
tsv
42
bed narrowPeak
41
bam
39
bigWig
24
tagAlign
5
bed bed3+
2
bedpe bed3+
1
hic
1
vcf
Organism
182
Homo sapiens
Biosample type
101
tissue
42
in vitro differentiated cells
36
cell line
4
primary cell
Organ
92
heart
35
liver
embryo
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
2
kidney
1
adipose tissue
Project
183
AMP
Genome assembly (visualization)
51
hg19
33
GRCh38
Lab
143
AMP-T2D consortium
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
lab.title!
Katalin Susztak, Upenn
month_released!
May, 2020
organ_slims!
embryo
BIOSAMPLE
ASSAY
183 results
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Clear Filters
single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
aorta
4
+ See 10 more…
in vitro differentiated cells
neural progenitor cell
21
7
10
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
18
9
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
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