Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
953
total RNA-seq
594
ChIP-seq
147
DNase-seq
130
ATAC-seq
87
RNA microarray
70
single cell RNA-seq
22
snATAC-seq
19
WGBS
18
pCHi-C
15
small RNA-seq
12
Hi-C
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1038
Transcription
594
DNA binding
303
DNA accessibility
29
DNA methylation
12
3D chromatin structure
Target of assay
370
histone modification
369
histone
210
broad histone mark
159
narrow histone mark
144
control
82
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
October, 2019
193
May, 2020
136
June, 2019
120
July, 2018
94
May, 2019
82
November, 2017
74
October, 2018
66
May, 2022
59
February, 2023
57
July, 2019
48
December, 2017
47
September, 2023
40
November, 2019
38
May, 2021
33
March, 2020
26
November, 2018
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
9
August, 2021
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1596
bam
1462
bigWig
959
tsv
601
bed narrowPeak
426
bigBed narrowPeak
377
fastq
189
tagAlign
182
bed broadPeak
174
bed bed3+
145
bigBed broadPeak
100
txt
18
bed bedMethyl
18
bigBed bedMethyl
7
bedpe bed3+
7
hic
6
csv
5
bed bed3
1
bedpe
Organism
2079
Homo sapiens
Biosample type
2088
tissue
1041
primary cell
566
cell line
385
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
502
pancreas
487
adipose tissue
355
liver
heart
179
brain
158
bone element
153
kidney
107
blood vessel
107
vasculature
82
musculature of body
53
limb
47
artery
35
eye
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1991
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1486
hg19
1439
GRCh38
Lab
1918
AMP-T2D consortium
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Katalin Susztak, Upenn
month_released!
October, 2019
organ_slims!
heart
BIOSAMPLE
ASSAY
2088 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
284
50
1
55
7
3
1
1
4
adipose tissue
382
2
2
3
1
liver
166
140
2
20
1
3
1
1
1
1
kidney
23
13
53
1
1
bone element
84
+ See 96 more…
See all biosamples
Download