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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
44
ATAC-seq
6
ChIP-seq
2
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
46
DNA accessibility
6
DNA binding
Target of assay
transcription factor
4
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
62
February, 2021
35
February, 2023
October, 2019
4
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
71
bam
59
bigWig
58
tsv
48
bed narrowPeak
4
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
tagAlign
Organism
110
Homo sapiens
Biosample type
62
cell line
46
tissue
2
primary cell
Organ
909
pancreas
640
connective tissue
480
epithelium
473
adipose tissue
446
liver
333
heart
197
brain
180
vasculature
179
kidney
175
blood vessel
159
bone element
110
artery
96
musculature of body
53
limb
39
eye
34
embryo
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
110
AMP
Genome assembly (visualization)
102
GRCh38
67
hg19
Lab
110
AMP-T2D consortium
lab.title!
Katalin Susztak, Upenn
month_released!
October, 2019
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
110 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
2
tissue
coronary artery
1
36
4
2
pulmonary artery
2
tibial artery
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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