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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
41
ChIP-seq
35
ATAC-seq
3
pCHi-C
3
total RNA-seq
2
Hi-C
2
RRBS
2
WGBS
Assay category
96
Transcription
41
DNA binding
35
DNA accessibility
4
DNA methylation
2
3D chromatin structure
Target of assay
36
histone
36
histone modification
20
broad histone mark
16
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
36
February, 2023
5
March, 2020
4
July, 2019
3
February, 2020
1
April, 2019
October, 2019
Available data
217
bigWig
bam
186
bed narrowPeak
166
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
2
bedpe bed3+
2
hic
Organism
181
Homo sapiens
Biosample type
180
tissue
1
primary cell
Organ
253
pancreas
204
epithelium
181
heart
110
liver
93
bone element
87
connective tissue
66
kidney
50
vasculature
49
blood vessel
48
adipose tissue
40
brain
39
artery
39
musculature of body
33
eye
20
lung
9
blood
9
bodily fluid
8
skeleton
7
limb
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
1
vein
Project
181
AMP
Genome assembly (visualization)
75
GRCh38
5
hg19
Lab
141
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
lab.title!
Katalin Susztak, Upenn
month_released!
October, 2019
files.file_type!
bam
BIOSAMPLE
ASSAY
181 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
Hi-C
RRBS
WGBS
tissue
left cardiac atrium
18
40
coronary artery
35
1
heart left ventricle
18
1
1
1
1
2
heart right ventricle
17
1
1
right cardiac atrium
18
1
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primary cell
cardiac fibroblast
1
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