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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
10
total RNA-seq
8
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
18
Transcription
4
DNA accessibility
Date released
90
February, 2021
7
February, 2023
7
May, 2022
1
November, 2018
1
October, 2022
1
September, 2018
Available data
3392
bam
3169
bigWig
1753
bed narrowPeak
1599
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
153
zippedFastqFolder
104
txt
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
106
Homo sapiens
Biosample type
101
tissue
3
in vitro differentiated cells
2
primary cell
1
cell line
Organ
88
bone element
6
pancreas
5
kidney
4
skeleton
1
liver
1
musculature of body
Project
107
AMP
Genome assembly (visualization)
4
hg19
Lab
98
AMP-T2D consortium
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
lab.title!
Katalin Susztak, Upenn
organ_slims!
adrenal gland
BIOSAMPLE
ASSAY
107 results
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RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
islet of Langerhans
6
kidney
5
acetabular part of hip bone
1
ilium
1
+ See 4 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
primary cell
pancreatic cell
2
cell line
MIN6
1
See all biosamples
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