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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1737
ChIP-seq
1412
total RNA-seq
409
ATAC-seq
259
single cell RNA-seq
182
DNase-seq
87
RNA microarray
78
snATAC-seq
67
WGBS
54
pCHi-C
30
Hi-C
19
RRBS
17
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
259
Transcription
Target of assay
3
control
Date released
48
July, 2018
47
September, 2023
43
April, 2018
40
September, 2020
34
May, 2022
18
February, 2021
9
April, 2020
6
August, 2021
3
August, 2018
3
December, 2019
3
July, 2019
3
June, 2018
1
November, 2018
1
September, 2018
Available data
128
fastq
113
tsv
100
bam
100
bigWig
52
zippedFastqFolder
8
csv
5
txt
Organism
259
Homo sapiens
Biosample type
187
primary cell
70
tissue
2
in vitro differentiated cells
Organ
heart
74
pancreas
70
epithelium
53
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Project
118
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
100
GRCh38
100
hg19
Lab
118
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
9
inconsistent ontology term
7
audit script error
lab.title!
Katalin Susztak, Upenn
organ_slims!
heart
BIOSAMPLE
ASSAY
259 results
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single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 14 more…
tissue
kidney
53
lung
9
aorta
4
pulmonary artery
2
liver
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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