Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
93
single cell RNA-seq
68
total RNA-seq
47
ATAC-seq
27
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
162
Transcription
74
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Date released
92
August, 2021
60
February, 2021
36
February, 2023
27
June, 2019
20
July, 2019
7
March, 2020
3
February, 2020
3
May, 2021
3
October, 2019
Available data
164
tsv
111
bam
103
bigWig
74
bed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
27
bigBed narrowPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
251
Homo sapiens
Biosample type
190
tissue
60
cell line
primary cell
1
in vitro differentiated cells
Organ
504
connective tissue
452
pancreas
416
adipose tissue
251
heart
229
liver
158
bone element
139
kidney
120
blood vessel
120
vasculature
105
artery
81
epithelium
56
brain
56
limb
54
eye
53
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
blood
1
bodily fluid
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
251
AMP
Genome assembly (visualization)
146
GRCh38
107
hg19
Lab
251
AMP-T2D consortium
lab.title!
Katalin Susztak, Upenn
assay_title!
ChIP-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
251 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
coronary artery
1
36
2
heart left ventricle
18
3
2
3
4
1
1
1
heart
1
4
18
1
1
1
heart right ventricle
17
1
1
2
1
1
right cardiac atrium
18
1
1
+ See 10 more…
cell line
smooth muscle cell of the coronary artery
52
8
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
Download