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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
93
single cell RNA-seq
62
total RNA-seq
43
ATAC-seq
30
DNase-seq
3
Hi-C
3
pCHi-C
Assay category
155
Transcription
73
DNA accessibility
3
3D chromatin structure
Date released
92
August, 2021
60
February, 2021
36
February, 2023
30
June, 2019
July, 2019
7
March, 2020
3
February, 2020
3
May, 2021
3
October, 2019
Available data
157
tsv
97
bam
89
bigWig
73
bed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
30
bigBed narrowPeak
3
bedpe bed3+
3
hic
Organism
234
Homo sapiens
Biosample type
170
tissue
60
cell line
3
primary cell
1
in vitro differentiated cells
Organ
722
pancreas
513
connective tissue
406
adipose tissue
382
epithelium
234
heart
229
liver
159
bone element
149
kidney
122
vasculature
120
blood vessel
104
artery
55
eye
51
limb
50
brain
47
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
234
AMP
Genome assembly (visualization)
132
GRCh38
97
hg19
Lab
234
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
lab.title!
Katalin Susztak, Upenn
assay_title!
ChIP-seq
month_released!
July, 2019
BIOSAMPLE
ASSAY
234 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
tissue
coronary artery
1
35
2
heart left ventricle
18
1
3
1
1
heart
1
2
18
1
heart right ventricle
17
1
1
1
1
left cardiac atrium
18
1
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cell line
smooth muscle cell of the coronary artery
52
8
primary cell
cardiac fibroblast
3
in vitro differentiated cells
cardiac fibroblast
1
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