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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
13
ATAC-seq
9
total RNA-seq
2
DNase-seq
1
pCHi-C
Assay category
39
DNA binding
15
DNA accessibility
9
Transcription
Target of assay
28
histone
28
histone modification
16
broad histone mark
12
narrow histone mark
11
control
Date released
46
October, 2019
8
February, 2021
8
February, 2023
1
February, 2020
1
March, 2020
Available data
50
bam
35
bed narrowPeak
31
bigWig
26
bigBed narrowPeak
6
tsv
4
bed bed3
4
txt
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
64
Homo sapiens
Biosample type
64
tissue
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
286
brain
236
vasculature
230
blood vessel
212
kidney
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
64
AMP
Genome assembly (visualization)
43
hg19
39
GRCh38
Lab
64
AMP-T2D consortium
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
64 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
tissue
tibial nerve
35
1
5
2
islet of Langerhans
4
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
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