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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
6
single cell RNA-seq
3
total RNA-seq
1
Hi-C
1
WGBS
1
pCHi-C
Assay category
18
DNA binding
9
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
18
control
Date released
11
May, 2019
6
August, 2021
5
October, 2019
3
February, 2020
2
February, 2021
2
March, 2020
1
July, 2019
Available data
19
bam
10
tsv
2
tagAlign
1
bedpe bed3+
1
hic
Organism
30
Homo sapiens
Biosample type
28
tissue
primary cell
2
cell line
Organ
257
liver
157
pancreas
124
heart
111
connective tissue
92
bone element
74
kidney
67
adipose tissue
62
brain
53
eye
49
epithelium
40
musculature of body
30
blood vessel
30
vasculature
26
limb
20
lung
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
30
AMP
Genome assembly (visualization)
GRCh38
134
hg19
Lab
30
AMP-T2D consortium
lab.title!
Katalin Susztak, Upenn
assembly!
GRCh38
biosample_type!
primary cell
BIOSAMPLE
ASSAY
30 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
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cell line
smooth muscle cell of the coronary artery
2
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