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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
total RNA-seq
89
ChIP-seq
22
ATAC-seq
6
DNase-seq
4
WGBS
3
small RNA-seq
2
Hi-C
2
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
179
Transcription
89
DNA binding
28
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
histone modification
84
histone
51
narrow histone mark
48
control
41
transcription factor
33
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
166
May, 2020
46
December, 2017
40
May, 2022
21
August, 2017
10
July, 2019
7
November, 2018
5
December, 2019
3
March, 2020
2
June, 2019
2
October, 2019
1
August, 2021
1
February, 2020
1
February, 2021
Available data
250
bam
225
bigWig
159
tsv
68
bed narrowPeak
68
fastq
43
bigBed narrowPeak
27
tagAlign
9
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
305
Homo sapiens
Biosample type
cell line
291
tissue
11
primary cell
3
in vitro differentiated cells
Organ
722
pancreas
606
connective tissue
459
adipose tissue
364
epithelium
305
liver
230
heart
163
kidney
159
bone element
99
brain
99
vasculature
94
blood vessel
73
limb
63
musculature of body
58
eye
55
artery
20
lung
19
nerve
19
spleen
18
ureter
17
embryo
16
skeleton
8
blood
8
bodily fluid
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
305
AMP
Genome assembly (visualization)
230
hg19
206
GRCh38
Lab
265
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
lab.title!
Katalin Susztak, Upenn
target.investigated_as!
histone modification
biosample_type!
cell line
BIOSAMPLE
ASSAY
305 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
80
20
2
3
1
1
1
1
1
right lobe of liver
3
5
1
2
1
2
primary cell
hepatocyte
5
1
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
3
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