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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ChIP-seq
5
total RNA-seq
2
DNase-seq
1
ATAC-seq
Assay category
11
DNA binding
5
Transcription
3
DNA accessibility
Target of assay
histone
24
histone modification
16
broad histone mark
11
control
8
narrow histone mark
Date released
18
October, 2019
1
February, 2020
Available data
18
bam
7
bigWig
5
tsv
3
bed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
Organism
19
Homo sapiens
Biosample type
19
tissue
Organ
685
liver
637
pancreas
605
connective tissue
459
adipose tissue
323
kidney
293
heart
274
epithelium
160
vasculature
159
bone element
155
blood vessel
121
artery
96
brain
69
limb
68
blood
68
bodily fluid
58
eye
57
musculature of body
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
19
AMP
Genome assembly (visualization)
7
GRCh38
7
hg19
Lab
19
AMP-T2D consortium
lab.title!
Klaus Kaestner, Upenn
assay_slims!
3D chromatin structure
target.investigated_as!
histone
BIOSAMPLE
ASSAY
19 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
tissue
tibial nerve
11
5
2
1
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