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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
DNase-seq
178
ATAC-seq
5
FAIRE-seq
1
snATAC-seq
Assay category
1578
DNA binding
1472
Transcription
393
DNA accessibility
18
DNA methylation
Date released
187
June, 2019
45
May, 2020
26
November, 2019
19
May, 2022
18
February, 2021
15
October, 2019
14
September, 2018
13
May, 2021
10
August, 2017
10
August, 2021
10
November, 2018
8
July, 2019
7
October, 2017
5
September, 2017
3
February, 2023
2
November, 2020
1
March, 2019
Available data
492
bed narrowPeak
389
bam
340
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
65
fastq
64
xls
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
393
Homo sapiens
Biosample type
246
tissue
114
primary cell
21
in vitro differentiated cells
12
cell line
Organ
80
kidney
75
pancreas
44
limb
42
epithelium
42
heart
35
brain
34
musculature of body
23
vasculature
21
blood vessel
18
ureter
14
artery
14
connective tissue
8
bone element
8
liver
8
skeleton
5
adipose tissue
4
eye
3
nerve
3
vein
2
spleen
Project
393
AMP
Genome assembly (visualization)
367
hg19
318
GRCh38
Lab
371
AMP-T2D consortium
18
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
1
Mark McCarthy, Oxford
Audit category:
20
inconsistent ontology term
1
audit script error
1
inconsistent replicate
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
393 results
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Clear Filters
DNase-seq
ATAC-seq
FAIRE-seq
snATAC-seq
tissue
islet of Langerhans
1
38
1
heart
18
muscle of arm
17
brain
14
kidney
13
1
+ See 53 more…
primary cell
monocyte
15
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 49 more…
in vitro differentiated cells
neural progenitor cell
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
cardiac precursors (cardiac muscle cell)
1
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
1
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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