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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
155
total RNA-seq
151
ATAC-seq
102
single cell RNA-seq
31
DNase-seq
17
pCHi-C
10
RRBS
8
snATAC-seq
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
259
Transcription
191
DNA accessibility
11
DNA methylation
7
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
85
May, 2021
48
July, 2018
43
April, 2018
41
September, 2018
31
July, 2019
24
June, 2019
12
February, 2023
10
October, 2019
8
January, 2021
6
August, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
367
bam
356
bigWig
264
tsv
146
fastq
69
bed narrowPeak
52
bigBed narrowPeak
34
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
485
Homo sapiens
Biosample type
1867
tissue
485
primary cell
196
in vitro differentiated cells
178
cell line
7
stem cell
Organ
162
epithelium
124
pancreas
27
connective tissue
21
kidney
14
vasculature
12
brain
11
blood vessel
10
liver
8
blood
8
bodily fluid
8
heart
5
vein
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
364
AMP
120
T1D
1
ITG
Genome assembly (visualization)
378
hg19
319
GRCh38
Lab
362
AMP-T2D consortium
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
29
inconsistent ontology term
1
audit script error
lab.title!
Klaus Kaestner, Upenn
assay_title!
ChIP-seq
snDrop-seq
BIOSAMPLE
ASSAY
485 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
RRBS
snATAC-seq
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
15
1
1
pancreatic beta cell
10
7
12
pancreatic alpha cell
10
6
12
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
1
CD4-positive, alpha-beta memory T cell
22
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