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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
total RNA-seq
ChIP-seq
16
pCHi-C
8
snATAC-seq
1
Hi-C
Assay category
96
Transcription
8
DNA accessibility
1
3D chromatin structure
Date released
67
May, 2021
45
May, 2020
8
January, 2021
1
March, 2023
Available data
96
bam
96
bigWig
96
tsv
1
hic
Organism
121
Homo sapiens
Biosample type
121
primary cell
95
tissue
9
cell line
2
stem cell
Organ
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
AMP
120
T1D
1
ITG
Genome assembly (visualization)
97
GRCh38
96
hg19
Lab
Klaus Kaestner, Upenn
120
Kyle Gaulton, UCSD
1
ITG
Audit category:
5
inconsistent ontology term
lab.title!
Klaus Kaestner, Upenn
assay_title!
ChIP-seq
award.project!
AMP
BIOSAMPLE
ASSAY
121 results
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total RNA-seq
pCHi-C
snATAC-seq
Hi-C
primary cell
monocyte
53
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
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