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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1441
total RNA-seq
482
ATAC-seq
278
single cell RNA-seq
212
DNase-seq
87
RNA microarray
57
pCHi-C
36
snATAC-seq
31
Hi-C
28
WGBS
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
28
DNA methylation
5
DNA accessibility
Date released
14
July, 2019
10
August, 2017
8
November, 2018
1
October, 2019
Available data
23
bam
22
bigWig
17
bed bedMethyl
17
bigBed bedMethyl
13
fastq
5
bed narrowPeak
5
bigBed narrowPeak
1
tar
Organism
33
Homo sapiens
Biosample type
31
tissue
1
cell line
1
primary cell
Organ
8
heart
6
adipose tissue
6
connective tissue
6
pancreas
5
liver
3
blood vessel
3
vasculature
2
spleen
1
brain
1
epithelium
1
kidney
1
limb
1
musculature of body
1
vein
Project
33
AMP
Genome assembly (visualization)
17
GRCh38
5
hg19
Lab
Klaus Kaestner, Upenn
33
AMP-T2D consortium
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
33 results
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WGBS
FAIRE-seq
tissue
heart left ventricle
4
adipose tissue
3
liver
3
pancreas
2
1
subcutaneous abdominal adipose tissue
3
+ See 11 more…
cell line
HepG2
1
primary cell
endothelial cell of umbilical vein
1
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