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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1761
ChIP-seq
1441
total RNA-seq
482
ATAC-seq
277
single cell RNA-seq
203
DNase-seq
87
RNA microarray
57
pCHi-C
36
snATAC-seq
31
Hi-C
21
RRBS
21
WGBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
21
DNA methylation
Date released
12
July, 2019
9
August, 2017
November, 2018
Available data
11
bam
10
bed bedMethyl
10
bigBed bedMethyl
10
bigWig
4
fastq
Organism
21
Homo sapiens
Biosample type
21
tissue
Organ
8
heart
6
adipose tissue
6
connective tissue
4
liver
2
blood vessel
2
vasculature
1
limb
1
musculature of body
Project
21
AMP
Genome assembly (visualization)
10
GRCh38
Lab
Klaus Kaestner, Upenn
21
AMP-T2D consortium
lab.title!
Klaus Kaestner, Upenn
month_released!
November, 2018
BIOSAMPLE
ASSAY
21 results
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WGBS
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
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