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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ATAC-seq
37
ChIP-seq
16
pCHi-C
10
RRBS
8
snATAC-seq
7
Hi-C
5
total RNA-seq
2
DNase-seq
2
single cell RNA-seq
1
DNAme array
Assay category
77
DNA accessibility
37
DNA binding
11
DNA methylation
7
3D chromatin structure
7
Transcription
Target of assay
34
histone
34
histone modification
22
broad histone mark
12
narrow histone mark
3
control
Date released
57
May, 2020
57
May, 2021
13
July, 2019
12
February, 2023
8
January, 2021
3
October, 2019
1
August, 2017
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
bam
603
bigWig
295
bed narrowPeak
264
tsv
240
fastq
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
155
Homo sapiens
Biosample type
830
tissue
155
primary cell
103
in vitro differentiated cells
80
cell line
7
stem cell
Organ
12
epithelium
8
blood
8
bodily fluid
5
kidney
5
vasculature
4
blood vessel
4
brain
3
connective tissue
2
liver
2
vein
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
130
AMP
24
T1D
1
ITG
Genome assembly (visualization)
51
hg19
1
GRCh38
Lab
Klaus Kaestner, Upenn
95
AMP-T2D consortium
59
Kyle Gaulton, UCSD
1
ITG
Audit category:
9
inconsistent ontology term
1
audit script error
lab.title!
Klaus Kaestner, Upenn
files.file_type!
bam
BIOSAMPLE
ASSAY
155 results
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ATAC-seq
ChIP-seq
pCHi-C
RRBS
snATAC-seq
Hi-C
total RNA-seq
DNase-seq
single cell RNA-seq
DNAme array
primary cell
CD8-positive, alpha-beta T cell
33
1
2
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
1
peripheral blood mononuclear cell
8
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