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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
590
ChIP-seq
177
DNase-seq
158
ATAC-seq
16
WGBS
16
small RNA-seq
Assay category
590
DNA binding
335
DNA accessibility
16
DNA methylation
16
Transcription
Target of assay
494
histone modification
493
histone
251
narrow histone mark
242
broad histone mark
93
transcription factor
27
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
153
October, 2019
92
May, 2019
69
August, 2017
64
April, 2019
64
August, 2021
57
November, 2017
45
October, 2018
40
May, 2024
36
December, 2017
35
February, 2023
30
July, 2019
22
November, 2018
20
November, 2019
19
May, 2020
14
October, 2017
11
May, 2023
8
February, 2021
6
January, 2019
3
December, 2018
2
March, 2019
2
March, 2020
2
September, 2017
Available data
883
bed narrowPeak
811
bigWig
802
bam
555
bigBed narrowPeak
204
bed bed3+
191
bed broadPeak
183
fastq
176
bigBed broadPeak
116
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
16
tsv
1
tagAlign bed3+
Organism
951
Homo sapiens
Biosample type
957
tissue
376
primary cell
360
cell line
138
in vitro differentiated cells
3
stem cell
Organ
198
brain
179
heart
164
kidney
117
pancreas
101
blood vessel
101
vasculature
92
limb
89
liver
62
artery
39
musculature of body
27
adipose tissue
27
connective tissue
27
nerve
18
ureter
16
spleen
8
bone element
8
skeleton
3
eye
1
pituitary gland
Project
955
AMP
2
T1D
Genome assembly (visualization)
957
GRCh38
853
hg19
Lab
839
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Klaus Kaestner, Upenn
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
957 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
tissue
kidney
20
13
75
liver
75
2
1
islet of Langerhans
25
1
22
coronary artery
3
2
36
left cardiac atrium
40
1
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