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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
905
ChIP-seq
249
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
27
WGBS
24
pCHi-C
18
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
905
DNA binding
449
DNA accessibility
190
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
626
histone modification
625
histone
322
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
220
October, 2019
195
August, 2017
179
August, 2021
163
June, 2019
115
May, 2019
101
February, 2021
82
November, 2017
80
April, 2019
74
October, 2018
69
February, 2023
50
May, 2020
48
December, 2017
47
September, 2023
46
July, 2019
40
May, 2022
40
May, 2024
29
March, 2020
26
November, 2018
23
October, 2017
21
November, 2019
19
April, 2020
14
May, 2023
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
998
bam
982
bed narrowPeak
869
bigWig
561
bigBed narrowPeak
274
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
145
tsv
98
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1707
Homo sapiens
Biosample type
1716
tissue
542
cell line
501
primary cell
258
in vitro differentiated cells
10
stem cell
Organ
298
heart
249
kidney
248
brain
193
pancreas
191
liver
126
blood vessel
126
vasculature
115
limb
96
bone element
92
connective tissue
91
adipose tissue
77
musculature of body
71
artery
38
nerve
37
eye
25
spleen
20
lung
18
ureter
13
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
thymus
1
urinary bladder
Project
1650
AMP
47
KPMP
T1D
19
LungMap
Genome assembly (visualization)
955
GRCh38
851
hg19
Lab
1468
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
18
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Klaus Kaestner, Upenn
award.project!
T1D
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
1716 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
kidney
27
75
13
64
6
1
1
1
liver
145
20
2
1
3
1
1
1
1
islet of Langerhans
69
57
1
4
1
3
1
1
4
bone element
84
heart left ventricle
35
2
3
18
4
1
1
1
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