Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1030
total RNA-seq
905
ChIP-seq
249
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
27
WGBS
24
pCHi-C
18
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
249
DNA accessibility
Date released
68
February, 2023
64
August, 2021
38
May, 2022
20
November, 2019
16
October, 2019
11
May, 2023
8
February, 2021
8
October, 2017
6
July, 2019
4
March, 2019
2
August, 2017
2
January, 2018
2
March, 2020
Available data
208
bed narrowPeak
64
bam
64
xls
43
bigWig
29
fastq
5
bed bed3
3
bigBed narrowPeak
2
bed broadPeak
1
tsv
Organism
249
Homo sapiens
Biosample type
249
tissue
151
primary cell
42
in vitro differentiated cells
29
cell line
Organ
75
kidney
51
pancreas
39
heart
38
blood vessel
38
vasculature
37
artery
28
eye
21
liver
12
bone element
12
epithelium
12
skeleton
8
limb
6
adipose tissue
6
connective tissue
4
brain
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
249
AMP
T1D
Genome assembly (visualization)
158
GRCh38
122
hg19
Lab
131
AMP-T2D consortium
75
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
lab.title!
Klaus Kaestner, Upenn
award.project!
T1D
BIOSAMPLE
ASSAY
249 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
tissue
kidney
75
islet of Langerhans
57
coronary artery
36
liver
20
retina
15
+ See 29 more…
See all biosamples
Download