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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
224
ChIP-seq
198
ATAC-seq
174
single cell RNA-seq
130
total RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
9
WGBS
8
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
304
Transcription
227
DNA accessibility
224
DNA binding
17
DNA methylation
16
3D chromatin structure
Target of assay
120
control
105
histone
105
histone modification
56
narrow histone mark
49
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
229
August, 2021
101
February, 2021
95
February, 2023
89
August, 2017
82
October, 2019
47
September, 2023
29
March, 2020
25
February, 2020
25
November, 2017
23
May, 2020
22
May, 2019
22
May, 2022
21
November, 2019
19
April, 2020
15
April, 2019
15
May, 2023
14
July, 2019
8
January, 2021
6
October, 2017
4
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
May, 2021
2
October, 2018
1
August, 2022
Available data
1907
bam
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
905
Homo sapiens
Biosample type
907
tissue
146
primary cell
111
in vitro differentiated cells
85
cell line
6
stem cell
Organ
208
kidney
156
heart
100
bone element
89
pancreas
74
liver
63
blood vessel
63
vasculature
60
brain
53
eye
46
artery
46
connective tissue
45
adipose tissue
31
limb
23
musculature of body
20
lung
16
skeleton
15
epithelium
12
nerve
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
812
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
144
GRCh38
84
hg19
Lab
641
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
28
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
88
inconsistent ontology term
9
audit script error
lab.title!
Klaus Kaestner, Upenn
files.file_type!
bigWig
fastq
BIOSAMPLE
ASSAY
907 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
WGBS
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
7
75
64
49
6
1
1
islet of Langerhans
35
46
26
7
4
3
1
4
bone element
84
liver
46
1
20
1
1
2
coronary artery
2
35
1
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