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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
291
ChIP-seq
217
ATAC-seq
174
single cell RNA-seq
136
total RNA-seq
86
RNA microarray
27
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
310
Transcription
291
DNA binding
245
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
186
control
106
histone
106
histone modification
56
narrow histone mark
50
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
228
August, 2021
105
August, 2017
101
February, 2021
95
February, 2023
82
October, 2019
47
September, 2023
46
May, 2022
29
March, 2020
29
October, 2018
25
February, 2020
25
November, 2017
23
May, 2020
22
May, 2019
21
November, 2019
18
April, 2020
15
April, 2019
15
May, 2023
14
July, 2019
12
December, 2017
9
October, 2017
8
January, 2021
6
September, 2017
5
March, 2019
4
December, 2018
4
July, 2018
4
November, 2020
3
December, 2019
3
November, 2018
2
May, 2021
1
August, 2022
1
January, 2019
Available data
1900
bam
bigWig
1076
tsv
978
bed narrowPeak
555
bigBed narrowPeak
370
fastq
231
tagAlign
207
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1002
Homo sapiens
Biosample type
1002
tissue
161
primary cell
136
cell line
135
in vitro differentiated cells
5
stem cell
Organ
208
kidney
156
heart
131
pancreas
100
bone element
96
liver
65
connective tissue
64
adipose tissue
63
blood vessel
63
brain
63
vasculature
53
eye
46
artery
31
limb
25
musculature of body
19
lung
16
skeleton
15
epithelium
12
nerve
9
spleen
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
908
AMP
47
KPMP
29
T1D
18
LungMap
Genome assembly (visualization)
147
GRCh38
108
hg19
Lab
712
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
18
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
88
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
lab.title!
Klaus Kaestner, Upenn
files.file_type!
bigWig
BIOSAMPLE
ASSAY
1002 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
7
75
64
49
6
1
1
islet of Langerhans
42
65
32
7
4
3
1
4
liver
63
1
20
1
1
1
3
bone element
84
coronary artery
2
35
1
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