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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
217
ATAC-seq
174
single cell RNA-seq
136
total RNA-seq
107
ChIP-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
3
snDrop-seq
2
MeRIP-seq
1
DNase-seq
Assay category
310
Transcription
246
DNA accessibility
107
DNA binding
22
DNA methylation
16
3D chromatin structure
Target of assay
control
106
histone
106
histone modification
56
narrow histone mark
50
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
229
August, 2021
101
February, 2021
95
February, 2023
77
August, 2017
55
October, 2019
47
September, 2023
46
May, 2022
29
March, 2020
25
February, 2020
21
November, 2019
19
April, 2020
15
May, 2023
14
July, 2019
13
November, 2017
8
January, 2021
6
October, 2017
5
March, 2019
4
July, 2018
3
December, 2019
2
May, 2021
2
November, 2020
1
April, 2019
1
August, 2022
Available data
bigWig
1740
bam
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
310
fastq
213
bed broadPeak
202
bed bed3+
186
tagAlign
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
816
Homo sapiens
Biosample type
818
tissue
136
primary cell
98
in vitro differentiated cells
70
cell line
6
stem cell
Organ
202
kidney
140
heart
103
pancreas
100
bone element
53
eye
50
liver
47
blood vessel
47
vasculature
42
connective tissue
41
adipose tissue
39
artery
38
brain
21
musculature of body
20
lung
16
skeleton
15
epithelium
14
limb
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
723
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
144
GRCh38
105
hg19
Lab
529
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
Audit category:
88
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
lab.title!
Klaus Kaestner, Upenn
files.file_type!
bigWig
target.investigated_as!
control
BIOSAMPLE
ASSAY
818 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
snDrop-seq
MeRIP-seq
DNase-seq
tissue
kidney
75
64
49
1
6
1
1
islet of Langerhans
65
32
29
7
4
3
1
2
bone element
84
liver
1
20
20
1
1
1
3
coronary artery
35
1
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