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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
16
WGBS
13
single cell RNA-seq
9
RRBS
1
snATAC-seq
Assay category
72
Transcription
25
DNA methylation
1
DNA accessibility
Date released
89
February, 2021
57
August, 2021
14
July, 2019
7
May, 2022
6
November, 2018
5
August, 2017
4
February, 2023
Available data
1907
bam
1772
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
182
Homo sapiens
Biosample type
182
tissue
10
primary cell
3
in vitro differentiated cells
2
cell line
Organ
88
bone element
63
kidney
12
pancreas
7
heart
4
musculature of body
4
skeleton
2
adipose tissue
2
connective tissue
2
spleen
1
blood vessel
1
brain
1
limb
1
liver
1
pericardium
1
vasculature
Project
182
AMP
Genome assembly (visualization)
16
GRCh38
10
hg19
Lab
119
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
6
audit script error
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
182 results
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RNA microarray
total RNA-seq
WGBS
single cell RNA-seq
RRBS
snATAC-seq
tissue
bone element
84
kidney
49
13
1
islet of Langerhans
6
1
heart left ventricle
2
1
pancreas
2
1
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