Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
53
total RNA-seq
13
single cell RNA-seq
1
snATAC-seq
Assay category
66
Transcription
1
DNA accessibility
Date released
89
February, 2021
57
August, 2021
4
February, 2023
1
May, 2022
Available data
1478
bam
1399
bigWig
861
bed narrowPeak
801
tsv
499
bigBed narrowPeak
222
tagAlign
193
bed broadPeak
178
bed bed3+
170
bigBed broadPeak
164
fastq
151
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
151
Homo sapiens
Biosample type
151
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
62
kidney
pancreas
4
skeleton
1
musculature of body
Project
151
AMP
Genome assembly (visualization)
1
hg19
Lab
94
AMP-T2D consortium
57
Katalin Susztak, Upenn
Audit category:
84
inconsistent ontology term
6
audit script error
lab.title!
Klaus Kaestner, Upenn
organ_slims!
pancreas
BIOSAMPLE
ASSAY
151 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
total RNA-seq
single cell RNA-seq
snATAC-seq
tissue
bone element
84
kidney
49
13
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
See all biosamples
Download