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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
total RNA-seq
67
single cell RNA-seq
40
ChIP-seq
4
MeRIP-seq
3
Hi-C
1
pCHi-C
Assay category
DNA accessibility
149
Transcription
40
DNA binding
3
3D chromatin structure
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
5
RNA binding protein
5
transcription factor
2
control
2
nucleotide modification
Date released
60
August, 2021
47
September, 2023
40
May, 2024
26
May, 2022
9
April, 2020
5
February, 2023
4
November, 2020
3
May, 2023
2
May, 2021
1
March, 2019
Available data
63
txt
40
bed narrowPeak
40
bigWig
6
bam
6
fastq
2
hic
1
bedpe
1
bedpe bed3+
1
tsv
Organism
197
Homo sapiens
Biosample type
232
primary cell
197
tissue
47
cell line
44
in vitro differentiated cells
2
stem cell
Organ
108
kidney
40
heart
20
liver
19
pancreas
9
lung
1
thymus
Project
135
AMP
47
KPMP
9
LungMap
6
T1D
Genome assembly (visualization)
40
GRCh38
2
hg19
Lab
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
lab.title!
Klaus Kaestner, Upenn
AMP-T2D consortium
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
197 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
MeRIP-seq
Hi-C
pCHi-C
tissue
kidney
49
58
1
left cardiac atrium
40
liver
20
islet of Langerhans
12
4
2
lung
9
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