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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ATAC-seq
82
total RNA-seq
67
single cell RNA-seq
40
ChIP-seq
26
snATAC-seq
4
MeRIP-seq
1
Hi-C
1
pCHi-C
Assay category
149
Transcription
114
DNA accessibility
40
DNA binding
1
3D chromatin structure
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
5
RNA binding protein
5
transcription factor
2
control
2
nucleotide modification
Date released
129
August, 2021
47
September, 2023
40
May, 2024
26
May, 2022
19
April, 2020
18
February, 2023
14
May, 2023
8
January, 2021
4
November, 2020
2
March, 2019
2
May, 2021
Available data
104
bed narrowPeak
64
xls
63
txt
40
bigWig
7
bam
7
fastq
1
bed broadPeak
1
bedpe bed3+
1
tsv
Organism
308
Homo sapiens
Biosample type
309
tissue
42
in vitro differentiated cells
32
cell line
25
primary cell
2
stem cell
Organ
188
kidney
41
pancreas
40
heart
20
liver
19
lung
1
thymus
Project
216
AMP
47
KPMP
27
T1D
19
LungMap
Genome assembly (visualization)
118
GRCh38
hg19
Lab
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
lab.title!
Klaus Kaestner, Upenn
AMP-T2D consortium
assembly!
hg19
BIOSAMPLE
ASSAY
309 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
MeRIP-seq
Hi-C
pCHi-C
tissue
kidney
75
49
58
6
left cardiac atrium
40
islet of Langerhans
13
12
6
4
1
liver
20
lung
9
10
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