Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ATAC-seq
82
total RNA-seq
40
ChIP-seq
26
snATAC-seq
20
single cell RNA-seq
4
MeRIP-seq
3
Hi-C
1
pCHi-C
Assay category
155
DNA accessibility
102
Transcription
40
DNA binding
3
3D chromatin structure
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
5
RNA binding protein
5
transcription factor
2
control
2
nucleotide modification
Date released
130
August, 2021
64
May, 2022
40
May, 2024
19
April, 2020
18
February, 2023
14
May, 2023
8
January, 2021
5
March, 2019
4
November, 2020
2
May, 2021
1
October, 2017
Available data
142
bed narrowPeak
64
xls
63
txt
61
bigWig
26
fastq
25
bam
2
bed broadPeak
2
hic
1
bedpe
1
bedpe bed3+
1
tsv
Organism
304
Homo sapiens
Biosample type
305
tissue
240
primary cell
54
in vitro differentiated cells
47
cell line
2
stem cell
Organ
142
kidney
63
pancreas
40
heart
40
liver
19
lung
1
thymus
Project
259
AMP
27
T1D
19
LungMap
Genome assembly (visualization)
118
GRCh38
43
hg19
Lab
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
lab.title!
Klaus Kaestner, Upenn
AMP-T2D consortium
KPMP
BIOSAMPLE
ASSAY
305 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
MeRIP-seq
Hi-C
pCHi-C
tissue
kidney
75
49
6
11
1
islet of Langerhans
34
12
6
4
2
left cardiac atrium
40
liver
20
20
lung
10
9
+ See 2 more…
See all biosamples
Download