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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ATAC-seq
13
total RNA-seq
10
snATAC-seq
4
MeRIP-seq
2
Hi-C
Assay category
44
DNA accessibility
13
Transcription
2
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
24
May, 2022
18
February, 2023
8
January, 2021
5
March, 2019
4
November, 2020
2
August, 2021
1
May, 2021
1
October, 2017
Available data
26
fastq
25
bam
18
bed narrowPeak
6
txt
2
bed broadPeak
1
bedpe
1
bedpe bed3+
1
bigWig
1
hic
1
tsv
Organism
63
Homo sapiens
Biosample type
63
tissue
6
cell line
Organ
189
kidney
63
pancreas
40
heart
40
liver
19
lung
1
thymus
Project
37
AMP
26
T1D
Genome assembly (visualization)
22
hg19
3
GRCh38
Lab
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
lab.title!
Klaus Kaestner, Upenn
AMP-T2D consortium
BIOSAMPLE
ASSAY
63 results
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ATAC-seq
total RNA-seq
snATAC-seq
MeRIP-seq
Hi-C
tissue
islet of Langerhans
34
12
6
4
2
pancreas
1
4
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