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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
833
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
833
DNA binding
Target of assay
598
histone modification
597
histone
313
narrow histone mark
284
broad histone mark
156
control
79
transcription factor
17
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
195
October, 2019
176
August, 2017
115
May, 2019
82
November, 2017
80
April, 2019
October, 2018
50
May, 2020
48
December, 2017
40
May, 2024
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
648
bam
570
bigWig
550
bed narrowPeak
332
bigBed narrowPeak
238
tagAlign
162
fastq
35
bed broadPeak
28
bed bed3+
1
tagAlign bed3+
Organism
826
Homo sapiens
Biosample type
833
tissue
484
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
209
brain
155
liver
123
heart
73
blood vessel
73
vasculature
66
limb
66
pancreas
51
connective tissue
50
adipose tissue
35
nerve
29
musculature of body
28
artery
27
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
831
AMP
2
T1D
Genome assembly (visualization)
545
GRCh38
484
hg19
Lab
793
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
lab.title!
Klaus Kaestner, Upenn
month_released!
October, 2018
BIOSAMPLE
ASSAY
833 results
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Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
71
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
heart left ventricle
35
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