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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1113
ChIP-seq
794
total RNA-seq
405
ATAC-seq
276
single cell RNA-seq
207
DNase-seq
86
RNA microarray
41
pCHi-C
36
snATAC-seq
23
Hi-C
21
RRBS
21
WGBS
15
small RNA-seq
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
1113
DNA binding
1085
Transcription
653
DNA accessibility
43
DNA methylation
23
3D chromatin structure
Target of assay
833
histone modification
832
histone
427
narrow histone mark
405
broad histone mark
198
control
87
transcription factor
33
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
340
May, 2020
286
August, 2017
275
October, 2019
246
May, 2021
232
August, 2021
217
June, 2019
168
July, 2018
162
February, 2021
120
May, 2019
106
February, 2023
96
July, 2019
91
November, 2017
80
April, 2019
73
September, 2018
66
May, 2022
53
October, 2018
49
April, 2018
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2024
39
November, 2019
26
November, 2018
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
7
December, 2018
7
January, 2019
5
March, 2019
3
August, 2018
3
June, 2018
1
August, 2022
1
January, 2018
1
March, 2023
Available data
2074
bam
1950
bigWig
1266
bed narrowPeak
939
tsv
660
bigBed narrowPeak
574
fastq
330
tagAlign
259
bed broadPeak
236
bed bed3+
223
bigBed broadPeak
157
txt
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
14
hic
11
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
1
bedpe
1
tagAlign bed3+
1
tar
Organism
3043
Homo sapiens
Biosample type
2289
tissue
762
primary cell
662
cell line
393
in vitro differentiated cells
10
stem cell
Organ
699
pancreas
586
connective tissue
adipose tissue
375
liver
335
kidney
326
heart
286
brain
269
epithelium
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2749
AMP
235
T1D
47
KPMP
19
LungMap
1
ITG
Genome assembly (visualization)
1961
GRCh38
1954
hg19
Lab
2459
AMP-T2D consortium
Klaus Kaestner, Upenn
291
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
144
inconsistent ontology term
27
inconsistent control
10
audit script error
Audit category:
58
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
lab.title!
Klaus Kaestner, Upenn
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
3051 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
RRBS
WGBS
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
DNAme array
tissue
islet of Langerhans
71
298
68
1
4
7
3
1
1
4
liver
145
167
20
1
2
1
1
1
3
1
kidney
27
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
1
1
4
+ See 169 more…
primary cell
monocyte
85
54
15
1
1
pancreatic beta cell
13
10
7
12
pancreatic alpha cell
13
10
6
12
CD8-positive, alpha-beta T cell
33
4
2
1
pancreatic ductal cell
13
4
4
10
+ See 91 more…
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