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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
DNase-seq
24
ChIP-seq
1
snATAC-seq
Assay category
175
DNA accessibility
24
DNA binding
Target of assay
12
histone
12
histone modification
9
transcription factor
6
broad histone mark
6
narrow histone mark
3
control
2
RNA binding protein
Date released
162
June, 2019
22
August, 2017
8
November, 2018
4
October, 2019
2
September, 2017
1
May, 2022
Available data
1467
bam
1349
bigWig
971
bed narrowPeak
677
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
199
Homo sapiens
Biosample type
199
tissue
37
primary cell
25
in vitro differentiated cells
3
cell line
3
stem cell
Organ
68
kidney
36
limb
33
musculature of body
27
brain
27
heart
27
pancreas
18
ureter
adipose tissue
6
connective tissue
6
liver
5
blood vessel
5
vasculature
4
artery
3
eye
2
nerve
1
spleen
Project
199
AMP
Genome assembly (visualization)
198
GRCh38
183
hg19
Lab
199
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
10
missing controlled_by
lab.title!
Klaus Kaestner, Upenn
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
199 results
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DNase-seq
ChIP-seq
snATAC-seq
tissue
islet of Langerhans
21
heart
18
muscle of arm
17
brain
14
kidney
13
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