Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
560
total RNA-seq
84
RNA microarray
34
pCHi-C
22
ATAC-seq
11
ChIP-seq
10
Hi-C
6
single cell RNA-seq
3
snDrop-seq
Assay category
566
Transcription
22
DNA accessibility
11
DNA binding
10
3D chromatin structure
Target of assay
5
transcription factor
3
control
3
histone
3
histone modification
3
narrow histone mark
Date released
666
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
168
July, 2018
126
February, 2023
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
64
March, 2020
61
November, 2019
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
598
tsv
588
bam
571
bigWig
89
txt
26
bed narrowPeak
12
bedpe bed3+
10
hic
8
tagAlign
6
csv
bed bedgraph
2
bed bed3
2
bed bed3+
2
ibed
Organism
730
Homo sapiens
Biosample type
585
tissue
107
cell line
30
in vitro differentiated cells
4
primary cell
4
stem cell
Organ
453
connective tissue
387
adipose tissue
150
bone element
73
heart
70
blood vessel
70
vasculature
66
artery
40
pancreas
32
epithelium
10
kidney
8
skeleton
6
limb
6
liver
5
musculature of body
2
brain
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
723
AMP
7
T1D
Genome assembly (visualization)
602
hg19
584
GRCh38
Lab
730
AMP-T2D consortium
Klaus Kaestner, Upenn
Audit category:
145
inconsistent ontology term
5
audit script error
1
inconsistent replicate
lab.title!
Klaus Kaestner, Upenn
files.file_type!
bed bedgraph
BIOSAMPLE
ASSAY
730 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
RNA microarray
pCHi-C
ATAC-seq
ChIP-seq
Hi-C
single cell RNA-seq
snDrop-seq
tissue
adipose tissue
381
1
bone element
84
bone tissue
58
islet of Langerhans
2
2
2
kidney
5
+ See 32 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
28
2
1
HepG2
1
1
early embryonic cell
2
iPSC derived cell line
2
+ See 4 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
primary cell
osteoblast
1
1
1
endothelial cell of umbilical vein
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
Download