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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
DNase-seq
4
ATAC-seq
2
Capture-C
1
Hi-C
1
pCHi-C
Assay category
11
DNA accessibility
1
3D chromatin structure
Date released
6
June, 2019
4
February, 2023
2
August, 2021
1
February, 2021
1
July, 2019
1
November, 2020
Available data
593
bam
570
bigWig
478
tsv
fastq
75
bed narrowPeak
28
bigBed narrowPeak
27
bed bed3+
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
15
Homo sapiens
Biosample type
8
primary cell
6
in vitro differentiated cells
1
tissue
Organ
78
kidney
36
limb
34
musculature of body
33
brain
30
heart
21
epithelium
18
ureter
15
connective tissue
13
vasculature
11
blood vessel
7
liver
6
pancreas
4
artery
4
eye
2
nerve
2
vein
1
adipose tissue
Project
15
AMP
Genome assembly (visualization)
14
hg19
7
GRCh38
Lab
13
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
lab.title!
Klaus Kaestner, Upenn
files.file_type!
fastq
BIOSAMPLE
ASSAY
15 results
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Clear Filters
DNase-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
primary cell
cardiac fibroblast
3
brain pericyte
1
1
osteoblast
1
1
hepatic stellate cell
1
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
tissue
omental fat pad
1
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