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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
15
DNase-seq
4
ATAC-seq
2
Capture-C
2
Hi-C
1
pCHi-C
Assay category
32
DNA binding
19
DNA accessibility
2
3D chromatin structure
Target of assay
17
transcription factor
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
3
control
2
RNA binding protein
Date released
30
August, 2017
10
June, 2019
4
February, 2023
3
November, 2018
2
August, 2021
2
October, 2019
2
September, 2017
1
February, 2021
1
July, 2019
1
November, 2020
Available data
1278
bam
1179
bigWig
885
tsv
500
fastq
289
bed narrowPeak
119
bigBed narrowPeak
56
bed bed3+
41
tagAlign
31
bed broadPeak
16
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
bed bed3
6
txt
5
bedpe bed3+
4
bed bedgraph
4
hic
2
hdf5
1
bedpe
Organism
56
Homo sapiens
Biosample type
33
tissue
13
in vitro differentiated cells
8
primary cell
2
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
56
AMP
Genome assembly (visualization)
53
hg19
48
GRCh38
Lab
54
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
Audit category:
14
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
56 results
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ChIP-seq
DNase-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
tissue
islet of Langerhans
21
body of pancreas
4
white adipose tissue
4
omental fat pad
2
pancreas
2
in vitro differentiated cells
adipocyte
7
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
primary cell
cardiac fibroblast
3
brain pericyte
1
1
osteoblast
1
1
hepatic stellate cell
1
cell line
Panc1
1
1
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