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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
ChIP-seq
5
Hi-C
2
ATAC-seq
Assay category
8
DNA binding
5
3D chromatin structure
2
DNA accessibility
Target of assay
4
histone
4
histone modification
4
transcription factor
3
broad histone mark
1
narrow histone mark
Date released
6
November, 2017
4
July, 2019
3
October, 2019
1
March, 2019
1
October, 2017
Available data
3392
bam
3159
bigWig
bed narrowPeak
1594
tsv
1189
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
15
Homo sapiens
Biosample type
7
cell line
6
primary cell
2
tissue
Organ
7
liver
4
blood vessel
4
epithelium
4
vasculature
3
brain
3
pancreas
2
vein
1
connective tissue
Project
15
AMP
Genome assembly (visualization)
14
hg19
2
GRCh38
Lab
13
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
inconsistent control read length
1
inconsistent assembly
lab.title!
Klaus Kaestner, Upenn
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
15 results
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Clear Filters
ChIP-seq
Hi-C
ATAC-seq
cell line
HepG2
6
Panc1
1
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
tissue
islet of Langerhans
2
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