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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
2
ATAC-seq
Assay category
19
DNA binding
2
DNA accessibility
Target of assay
25
histone
25
histone modification
15
broad histone mark
narrow histone mark
4
transcription factor
Date released
12
August, 2017
5
November, 2017
2
October, 2019
1
March, 2019
1
October, 2017
Available data
2987
bam
2719
bigWig
1594
tsv
1388
bed narrowPeak
1079
fastq
bigBed narrowPeak
293
bed broadPeak
271
bigBed broadPeak
260
bed bed3+
224
tagAlign
161
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
2
ibed
1
bedpe
1
vcf
Organism
21
Homo sapiens
Biosample type
14
tissue
5
cell line
2
primary cell
Organ
8
musculature of body
6
pancreas
5
liver
2
blood vessel
2
epithelium
2
vasculature
2
vein
Project
21
AMP
Genome assembly (visualization)
20
hg19
1
GRCh38
Lab
19
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent control read length
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
narrow histone mark
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
21 results
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Clear Filters
ChIP-seq
ATAC-seq
tissue
skeletal muscle tissue
8
islet of Langerhans
4
2
cell line
HepG2
5
primary cell
endothelial cell of umbilical vein
2
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