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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
28
ChIP-seq
2
ATAC-seq
Assay category
208
DNA accessibility
28
DNA binding
Target of assay
42
histone
42
histone modification
26
broad histone mark
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
187
June, 2019
November, 2017
26
August, 2017
9
November, 2018
9
October, 2019
3
October, 2017
1
March, 2019
1
November, 2020
Available data
2624
bam
2415
bigWig
1594
tsv
1104
bed narrowPeak
765
fastq
609
bigBed narrowPeak
260
bed bed3+
236
bed broadPeak
216
bigBed broadPeak
172
tagAlign
161
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
2
ibed
1
bedpe
1
tar
1
vcf
Organism
232
Homo sapiens
Biosample type
196
tissue
38
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
41
musculature of body
36
limb
34
brain
30
heart
18
epithelium
18
ureter
17
pancreas
13
vasculature
11
blood vessel
9
connective tissue
5
liver
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
236
AMP
Genome assembly (visualization)
219
GRCh38
212
hg19
Lab
234
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent assembly
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
narrow histone mark
month_released!
November, 2017
BIOSAMPLE
ASSAY
236 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
2
kidney
13
muscle of leg
13
+ See 41 more…
primary cell
skeletal muscle myoblast
1
8
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 18 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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